Dr Robert Ferguson

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Email
rmwfer@essex.ac.uk -
Telephone
+44 (0) 1206 872552
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Location
3SW.3.18, Colchester Campus
Profile
Biography
I investigate the interactions between the environment, microbial communities, and their implications for human and environmental health, with a particular focus on bioaerosols and antimicrobial resistance (AMR). Bioaerosols—airborne microorganisms—play a pivotal role in the Earth system and climate, while also posing significant health risks. These microorganisms can act as sensitisers, triggering respiratory diseases such as asthma, or as vectors for infectious agents like influenza. To better understand bioaerosols and their associated health risks in both indoor and outdoor air, I employ advanced molecular techniques, such as DNA sequencing. In addition to bioaerosols, I study the rising tide of AMR, particularly in the air and water. The quality of aquatic environments, such as rivers and coastal waters, is of growing importance. I collaborate with local stakeholders in ÌÇÐÄVlog to monitor microbial water quality and investigate how chemical pollution affects aquatic ecosystems and the spread of AMR. I am also focused on developing rapid detection methods for environmental pathogens. This includes refining techniques for isolating DNA from the air to detect pathogens and working on methods to detect norovirus in aquatic samples.
Qualifications
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PhD - Microbial Ecology Cranfield University, (2014)
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MSc - Sustainable Aquaculture Systems Plymouth University, (2009)
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BSc(hons) - Marine Biology Plymouth University, (2007)
Appointments
ÌÇÐÄVlog
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Senior Lecturer, School of Life Sciences, ÌÇÐÄVlog (1/7/2023 - present)
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Lecturer, ÌÇÐÄVlog (1/6/2020 - present)
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Senior postdoctoral research officer, ÌÇÐÄVlog (1/7/2015 - 31/5/2020)
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Public Outreach officer: NERC Environmental Microbiology and Human health Program, ÌÇÐÄVlog (1/1/2017 - 1/9/2018)
Other academic
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Postdoctoral Research assistant, University of Aberdeen (1/3/2014 - 30/6/2015)
Research and professional activities
Research interests
Microbial Ecology of Anaerobic Digestion/Wastewater treatment
Microbial Degradation of oil hydrocarbons
Nanoparticles
Bioaerosols
Molecular Microbial Ecology
Environmental microbiology and human health
Molecular Ecology
Antimicrobial resistance (AMR) in the environment
Metagenetics, metagenomics
Environmental Microbiology and Public Health
Air qualtiy (microbial, bioaerosols, machine-learning monitoring tools for monitoring)
Effect of pollution on microbial communities
Detection of pathogens with molecular methods
Water quality
Next generation sequencing and bioinformatics
Current research
Rapid monitoring of bioaerosols in industrial, agricultural and urban environments. RAMBIE
Next-generation sequencing is being used to investigate the airborne microbiome. Metagenetics and transcriptomics are being used to understand how the airborne microbiome interacts with the biotic and abiotic environment. Specific pathogens are being monitored directly in the field with qPCR and LAMP .
A Novel Framework for Predicting Emerging Chemical Stressor Impacts in Complex Ecosystems
Our overarching objective is to develop a new means of assessing how chemical stressors affect freshwater ecosystems and how this will be modulated by climate change.
Teaching and supervision
Current teaching responsibilities
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Marine Ecology (BS112)
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Transferable Skills in Life Sciences (BS143)
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Medical Microbiology (BS235)
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Molecular Ecology (BS240)
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Professional skills for Ecological and Marine Scientists (BS257)
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Marine Resources (BS705)
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Research Project in Life Sciences (BS832)
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Gene Technology and Synthetic Biology (BS934)
Publications
Journal articles (17)
Bani, A., Whitby, C., Colbeck, I., Dumbrell, AJ. and Ferguson, RMW., (2024). Rapid In-Field Detection of Airborne Pathogens Using Loop-Mediated Isothermal Amplification (LAMP). Microorganisms. 12 (12), 2578-2578
Ferguson, RMW., Neath, CEE., Nasir, ZA., Garcia-Alcega, S., Tyrrel, S., Coulon, F., Dumbrell, AJ., Colbeck, I. and Whitby, C., (2021). . Environment International. 147, 106327-106327
Ferguson, RMW., O'Gorman, EJ., McElroy, DJ., McKew, BA., Coleman, RA., Emmerson, MC. and Dumbrell, AJ., (2021). . Global Change Biology. 27 (13), 3166-3178
Saha, M., Ferguson, RMW., Dove, S., Kuenzel, S., Meichßner, R., Neulinger, SC., Petersen, FO. and Weinberger, F., (2020). . Frontiers in Microbiology. 10, 2870-
Garcia-Alcega, S., Nasir, ZA., Cipullo, S., Ferguson, RMW., Yan, C., Whitby, C., Dumbrell, AJ., Drew, G., Colbeck, I., Tyrrel, S. and Coulon, F., (2020). . Science of the Total Environment. 719, 137542-137542
Ferguson, RMW., Garcia-Alcega, S., Coulon, F., Dumbrell, AJ., Whitby, C. and Colbeck, I., (2019). . Molecular Ecology Resources. 19 (3), 672-690
Ferguson, RMW., Coulon, F. and Villa, R., (2018). . Science of the Total Environment. 642, 754-763
Clark, DR., Ferguson, RMW., Harris, DN., Matthews Nicholass, KJ., Prentice, HJ., Randall, KC., Randell, L., Warren, SL. and Dumbrell, AJ., (2018). . WIREs Water. 5 (4)
Garcia-Alcega, S., Nasir, ZA., Ferguson, RMW., Noël, C., Cravo-Laureau, C., Whitby, C., Dumbrell, AJ., Colbeck, I., Tyrrel, S. and Coulon, F., (2018). . Science of the Total Environment. 631–632, 1059-1069
Garcia-Alcega, S., Nasir, Z., Ferguson, RMW., Whitby, C., Dumbrell, AJ., Colbeck, I., Gomes, D., Tyrrel, S. and Coulon, F., (2017). . TrAC - Trends in Analytical Chemistry. 86, 75-83
Dumbrell, ALEXJ., Ferguson, RMW. and Clark, DR., (2017). Microbial Community Analysis by Single-Amplicon High-Throughput Next Generation Sequencing: Data Analysis – From Raw Output to Ecology. Hydrocarbon and Lipid Microbiology Protocols. Microbial Quantitation, Community Profiling and Array Approaches, 155-206
Ferguson, RMW., Gontikaki, E., Anderson, JA. and Witte, U., (2017). . Scientific Reports. 7 (1), 2253-
Eduok, S., Ferguson, RMW., Jefferson, B., Villa, R. and Coulon, F., (2017). . Science of the Total Environment. 609, 232-241
Ferguson, RMW., Coulon, F. and Villa, R., (2016). . Water Research. 100, 348-356
Eduok, S., Hendry, C., Ferguson, RMW., Martin, B., Villa, R., Jefferson, B. and Coulon, F., (2015). . FEMS Microbiology Ecology. 91 (7), fiv082-fiv082
Ferguson, RMW., Villa, R. and Coulon, F., (2014). Bioengineering options and strategies for the optimization of anaerobic digestion processes. Environmental Technology Reviews. 3 (1), 1-14
Ferguson, RMW., Merrifield, DL., Harper, GM., Rawling, MD., Mustafa, S., Picchietti, S., Balcázar, JL. and Davies, SJ., (2010). . Journal of Applied Microbiology. 109 (3), 851-862
Book chapters (2)
Bani, A., Randall, KC., Clark, DR., Gregson, BH., Henderson, DK., Losty, EC. and Ferguson, RMW., (2022). Mind the gaps: What do we know about how multiple chemical stressors impact freshwater aquatic microbiomes?. In: Functional Microbiomes. Editors: Bohan, DA. and Dumbrell, A., . Elsevier. 331- 377. 978-0-323-98593-2
Whitby, C., Ferguson, RMW., Colbeck, I., Dumbrell, AJ., Nasir, ZA., Marczylo, E., Kinnersley, R., Douglas, P., Drew, G., Bhui, K., Lemon, M., Jackson, S., Tyrrel, S. and Coulon, F., (2022). Compendium of analytical methods for sampling, characterization and quantification of bioaerosols. In: Functional Microbiomes. Editors: Bohan, DA. and Dumbrell, AJ., . Elsevier. 101- 229. 978-0-323-98593-2
Conferences (1)
Vorkamp, K., Viegas, C., Almeida, M., Aretaki, MA., Bossi, R., Castagnoli, E., Cervantes, R., Desmet, J., Diapouli, E., DomÃnquez, A., Fabian, CM., Fauser, P., Ferguson, RMW., Haverinen-Shaughnessy, U., Hugg, T., Kuurola, P., Lazaridis, M., Massling, A., Paciência, I., Pena, P., Rantala, AK., Schaefer, T., Viana, M., Vornanen-Winqvist, C., Zhu, L. and Salonen, H., (2024). The InChildHealth Walkthrough Survey - towards a standardized characterization of classrooms for Indoor Air Quality studies in Europe
Grants and funding
2025
Closing the budget in marine atmospheric Oxidative Capacity through the quantification of Oceanic VOC emissions (COCO-VOC)
Natural Environment Research Council
2024
Molecular methods for characterization of antimicrobial resistant bioaerosols
The Aerosol Society
2022
Airborne antimicrobial resistance: identifying the main environmental sources and health impacts
Academy of Medical Sciences
Identifying Determinants For Indoor Air Quality And Their Health Impact In Environments For Children: Measures To Improve Indoor Air Quality And Reduce Disease Burdens
European Commission
School and community engagement with tiny forests to enhance environmental and human health
North East ÌÇÐÄVlog Clinical Commissioning Group
2021
Exploring how sources, behaviour and mitigation strategies influence Indoor Air Quality: A Pilot Study
University of York (Funder)
Determine the drivers of pathogen and AMR occurrence in SSA water-harvesting systems to inform the design of interventions strategies
NERC Environmental Omics Facility (Funder)
2020
The effect of compost bioaerosols on microbial soil ecosystem services in surrounding farmland
Applied Microbiology International (formerly SFAM)
NI: BioSkyNet: the first global network of bioaerosols researchers
Natural Environment Research Council
2017
Using metagenomics for fine-scale resolution of pathogen functional and phylogenetic diversity in farm bioaerosols
The Aerosol Society
2016
Characterisation of bioaerosol bacterial communities in different size factions from urban, industrial and agricultural environments
The Aerosol Society
Contact
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